Water quality in marine and freshwater environments: a metagenomics approach

Authors

  • Carolina O. P. Gil PEB/COPPE-Federal University of Rio de Janeiro
  • Ana Carolina M. Pires PEB/COPPE-Federal University of Rio de Janeiro
  • Fernanda O. F. Schmidt PEB/COPPE-Federal University of Rio de Janeiro
  • Nathália S. C. Santos PEB/COPPE-Federal University of Rio de Janeiro
  • Priscila C. Alves PEB/COPPE-Federal University of Rio de Janeiro
  • Odara A. Oliveira PPGEN-Federal University of Rio de Janeiro
  • Dhara Avelino-Alves PPGEN-Federal University of Rio de Janeiro
  • Flávio F. Nobre PEB/COPPE-Federal University of Rio de Janeiro
  • Gizele Duarte Garcia PPGEN-Federal University of Rio de Janeiro
  • Cristiane C. Thompson PPGEN-Federal University of Rio de Janeiro
  • Graciela M. Dias IBCCF-Federal University of Rio de Janeiro
  • Fabiano F. Thompson PPGEN-Federal University of Rio de Janeiro
  • Diogo A. Tschoeke PEB/COPPE/PPGEN-Federal University of Rio de Janeiro

DOI:

https://doi.org/10.5753/jidm.2024.2624

Keywords:

Metagenomic of water, Quality of water, Biogeochemical cycles, Microorganisms

Abstract

In this article, we have reviewed the work carried out by the UFRJ microbiology laboratory related to water quality and microorganisms associated with different aquatic ecosystems. We placed water at the center of the One Health concept, due to the integration that water makes between different living beings and the environment. We selected papers published between 2012 and 2022 by UFRJ microbiology laboratory related to bioinformatics genomic and metagenomics analysis. We described the main impacts caused in aquatic environments, about the microorganisms involved in biogeochemical cycles, microorganisms as bioindicators and their resistance genes. Finally, we identified the microorganisms that were most abundant in all the articles studied and pointed out some public policies that we consider important to maintain water quality and reduce anthropic impacts.

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References

Ali, H. and Khan, E. (2019). Trophic transfer, bioaccumulation, and biomagnification of non-essential hazardous heavy metals and metalloids in food chains/webs—concepts and implications for wildlife and human health. Human and Ecological Risk Assessment: An International Journal, 25(6):1353–1376.

Alvarez, A., Saez, J. M., Costa, J. S. D., Colin, V. L., Fuentes, M. S., Cuozzo, S. A., Benimeli, C. S., Polti, M. A., and Amoroso, M. J. (2017). Actinobacteria: current research and perspectives for bioremediation of pesticides and heavy metals. Chemosphere, 166:41–62.

Alves Junior, N., Meirelles, P. M., de Oliveira Santos, E., Dutilh, B., Silva, G. G., Paranhos, R., Cabral, A. S., Rezende, C., Iida, T., de Moura, R. L., et al. (2015). Microbial community diversity and physical–chemical features of the southwestern atlantic ocean. Archives of microbiology, 197:165–179.

Amado-Filho, G. M., Moura, R. L., Bastos, A. C., Salgado, L. T., Sumida, P. Y., Guth, A. Z., Francini-Filho, R. B., Pereira-Filho, G. H., Abrantes, D. P., Brasileiro, P. S., et al. (2012). Rhodolith beds are major caco3 bio-factories in the tropical south west atlantic. PloS one, 7(4):e35171.

Amin, D. H., Abdallah, N. A., Abolmaaty, A., Tolba, S., and Wellington, E. M. (2020). Microbiological and molecular insights on rare actinobacteria harboring bioactive prospective. Bulletin of the National Research Centre, 44(1):1–12.

Amuasi, J. H., Lucas, T., Horton, R., and Winkler, A. S. (2020). Reconnecting for our future: the lancet one health commission. The Lancet, 395(10235):1469–1471.

ANA (2019). Agência Nacional de Águas e Saneamento Básico. Accessed on 2021-05-27.

Appolinario, L. R., Tschoeke, D., Calegario, G., Barbosa, L. H., Moreira, M. A., Albuquerque, A. L. S., Thompson, C. C., and Thompson, F. L. (2020a). Oil leakage induces changes in microbiomes of deep-sea sediments of campos basin (Brazil). Science of The Total Environment, 740:139556.

Appolinario, L. R., Tschoeke, D., Calegario, G., Barbosa, L. H., Moreira, M. A., Albuquerque, A. L. S., Thompson, C. C., and Thompson, F. L. (2020b). Oil leakage induces changes in microbiomes of deep-sea sediments of campos basin (Brazil). Science of The Total Environment, 740:139556.

Appolinario, L. R., Tschoeke, D., Paixão, R. V., Venas, T., Calegario, G., Leomil, L., Silva, B. S., Thompson, C. C., and Thompson, F. L. (2019). Metagenomics sheds light on the metabolic repertoire of oil-biodegrading microbes of the south atlantic ocean. Environmental Pollution, 249:295–304.

Bacha, L., Ventura, R., Barrios, M., Seabra, J., Tschoeke, D., Garcia, G., Masi, B., Macedo, L., Godoy, J. M. d. O., Cosenza, C., et al. (2022). Risk of collapse in water quality in the guandu river (Rio de Janeiro, Brazil). Microbial ecology, 84(1):314–324.

Batista, D., Costa, R., Carvalho, A. P., Batista, W. R., Rua, C. P., de Oliveira, L., Leomil, L., Fróes, A. M., Thompson, F. L., Coutinho, R., et al. (2018). Environmental conditions affect activity and associated microorganisms of marine sponges. Marine environmental research, 142:59–68.

Bauer, A. d. B., Paiva, T. d. C., Barboza, C. A. d. M., Malm, O., and Fischer, L. G. (2021). Mercury concentrations in four marine fishery resources from Rio de Janeiro Coast, SW Atlantic, and potential human health risk via fish consumption. Biological Trace Element Research, 199(12):4772–4781.

Beiras, R. (2018). Marine pollution: sources, fate and effects of pollutants in coastal ecosystems. Elsevier. Bélanger, P.-A., Beaudin, J., and Roy, S. (2011). High-throughput screening of microbial adaptation to environmental stress. Journal of microbiological methods, 85(2):92–97.

Berenshtein, I., Paris, C. B., Perlin, N., Alloy, M. M., Joye, S. B., and Murawski, S. (2020). Invisible oil beyond the deepwater horizon satellite footprint. Science advances, 6(7):eaaw8863.

Brasil (2005). Resolução CONAMA Nº 357, de 17 de março de 2005. Ministério do Meio Ambiente. Resolução CONAMA.

Bruce, T., Meirelles, P. M., Garcia, G., Paranhos, R., Rezende, C. E., de Moura, R. L., Filho, R.-F., Coni, E. O. C., Vasconcelos, A. T., Amado Filho, G., Hatay, M., Schmieder, R., Edwards, R., Dinsdale, E., and Thompson, F. L. (2012). Abrolhos Bank Reef Health Evaluated by Means of Water Quality, Microbial Diversity, Benthic Cover, and Fish Biomass Data. PLoS ONE, 7(6):e36687. DOI: 10.1371/journal.pone.0036687.

Burney, D. A. and Flannery, T. F. (2005). Fifty millennia of catastrophic extinctions after human contact. Trends in Ecology & Evolution, 20(7):395–401.

Callisto, M., Gonçalves Jr, J. F., and Moreno, P. (2005). Invertebrados aquáticos como bioindicadores. Navegando o Rio das velhas das Minas aos Gerais, 1:1–12.

Campeão, M. E., Reis, L., Leomil, L., de Oliveira, L., Otsuki, K., Gardinali, P., Pelz, O., Valle, R., Thompson, F. L., and Thompson, C. C. (2017). The deep-sea microbial community from the amazonian basin associated with oil degradation. Frontiers in Microbiology, 8:1019.

Campos, E. J. (2014). O papel do oceano nas mudanças climáticas globais. Revista USP, (103):55–66.

Cavalcanti, G. S., Shukla, P., Morris, M., Ribeiro, B., Foley, M., Doane, M. P., Thompson, C. C., Edwards, M. S., Dinsdale, E. A., and Thompson, F. L. (2018). Rhodoliths holobionts in a changing ocean: host-microbes interactions mediate coralline algae resilience under ocean acidification. BMC genomics, 19(1):1–13.

Chaudhry, F. N. and Malik, M. (2017). Factors affecting water pollution: a review. J. Ecosyst. Ecography, 7(1):225–231.

ChooChuay, C., Pongpiachan, S., Tipmanee, D., Deelaman, W., Suttinun, O., Wang, Q., Xing, L., Li, G., Han, Y., Palakun, J., et al. (2020). Long-range transboundary atmospheric transport of polycyclic aromatic hydrocarbons, carbonaceous compositions, and water-soluble ionic species in southern thailand. Aerosol and Air Quality Research, 20(7):1591–1606.

Cordeiro, M. C., Garcia, G. D., Rocha, A. M., Tschoeke, D. A., Campeão, M. E., Appolinario, L. R., Soares, A. C., Leomil, L., Froes, A., Bahiense, L., et al. (2019). Insights on the freshwater microbiomes metabolic changes associated with the world’s largest mining disaster. Science of the Total Environment, 654:1209–1217.

Costa, P. S., Tschoeke, D. A., Silva, B. S., Thompson, F., Reis, M. P., Chartone-Souza, E., and Nascimento, A. M. (2015). Draft genome sequence of micrococcus sp. strain ms-asiii-49, an arsenate-reducing isolate from tropical metal-rich sediment. Genome Announcements, 3(2):e00122–15.

Coutinho, F. H., Gregoracci, G. B., Walter, J. M., Thompson, C. C., and Thompson, F. L. (2018). Metagenomics sheds light on the ecology of marine microbes and their viruses. Trends in microbiology, 26(11):955–965.

Coutinho, F. H., Tschoeke, D. A., Clementino, M. M., Thompson, C. C., and Thompson, F. L. (2019). Genomic basis of antibiotic resistance in vibrio parahaemolyticus strain jpa1. Memórias do Instituto Oswaldo Cruz, 114.

de Oliveira Vicentini, J., de Albuquerque, C., and Inácio, M. S. (2021). O plano nacional de contingência para incidentes de poluição por óleo em águas brasileiras na mídia: uma análise do jornal Folha de São Paulo. ALCEU, 21(45):146–170.

Di Beneditto, A. P. M., Semensato, X. E. G., de Carvalho, C. E. V., and de Rezende, C. E. (2019). Trace metals in two commercial shrimps from southeast Brazil: Baseline records before large port activities in coastal waters. Marine Pollution Bulletin, 146:667–670. DOI: https://doi.org/10.1016/j.marpolbul.2019.07.028.

Doney, S. C., Fabry, V. J., Feely, R. A., and Kleypas, J. A. (2009). Ocean acidification: the other co2 problem. Annual review of marine science, 1:169–192.

Fistarol, G. O., Coutinho, F. H., Moreira, A. P. B., Venas, T., Cánovas, A., de Paula Jr, S. E., Coutinho, R., De Moura, R. L., Valentin, J. L., Tenenbaum, D. R., et al. (2015). Environmental and sanitary conditions of guanabara bay, rio de janeiro. Frontiers in microbiology, 6:1232.

Gerace, E., Presti, V. D. M. L., and Biondo, C. (2019). Cryptosporidium infection: epidemiology, pathogenesis, and differential diagnosis. European Journal of Microbiology and Immunology, 9(4):119–123.

Ghaly, A. and Ramakrishnan, V. (2015). Nitrogen sources and cycling in the ecosystem and its role in air, water and soil pollution: A critical review. Journal of Pollution Effects & Control, pages 1–26.

Gil, C. O., Pinto, L. M., Nobre, F. F., Thompson, C., Thompson, F., and Tschoke, D. A. (2021). Metagenomic insights of the microbial community from a polluted river in Brazil 2020. In Advances in Bioinformatics and Computational Biology: 14th Brazilian Symposium on Bioinformatics, BSB 2021, Virtual Event, November 22–26, 2021, Proceedings 14, pages 137–144. Springer.

Gomes, A. S., Palma, J. J., and Silva, C. G. (2000). Causas e conseqüências do impacto ambiental da exploração dos recursos minerais marinhos. Revista Brasileira de Geofísica, 18:447–454.

Gorriti, M. F., Dias, G. M., Chimetto, L. A., Trindade-Silva, A. E., Silva, B. S., Mesquita, M., Gregoracci, G. B., Farias, M. E., Thompson, C. C., and Thompson, F. L. (2014).

Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake. BMC genomics, 15(1):1–13.

Gregoracci, G. B., Nascimento, J. R., Cabral, A. S., Paranhos, R., Valentin, J. L., Thompson, C. C., and Thompson, F. L. (2012). Structuring of bacterioplankton diversity in a large tropical bay. PLoS One, 7(2):e31408.

Grossart, H.-P., Massana, R., McMahon, K. D., and Walsh, D. A. (2020). Linking metagenomics to aquatic microbial ecology and biogeochemical cycles. Limnology and Oceanography, 65:S2–S20.

Guimarães, B. d. S. (2012). Desenvolvimento de processos oxidativos avançados para degradação de agrotóxicos em meio aquoso. Master’s thesis.

Häder, D.-P., Banaszak, A. T., Villafañe, V. E., Narvarte, M. A., González, R. A., and Helbling, E. W. (2020). Anthropogenic pollution of aquatic ecosystems: Emerging problems with global implications. Science of the Total environment, 713:136586.

Haseena, M., Malik, M. F., Javed, A., Arshad, S., Asif, N., Zulfiqar, S., and Hanif, J. (2017). Water pollution and human health. Environmental Risk Assessment and Remediation, 1(3).

Helinski, O. K., Poor, C. J., and Wolfand, J. M. (2021). Ridding our rivers of plastic: A framework for plastic pollution capture device selection. Marine pollution bulletin, 165:112095.

Huemer, M., Mairpady Shambat, S., Brugger, S. D., and Zinkernagel, A. S. (2020). Antibiotic resistance and persistence—implications for human health and treatment perspectives. EMBO reports, 21(12). DOI: 10.15252/embr.202051034.

Hussein, E. I., Jacob, J. H., Shakhatreh, M. A. K., Abd Al-Razaq, M. A., Juhmani, A.-S. F., and Cornelison, C. T. (2018). Detection of antibiotic-producing actinobacteria in the sediment and water of ma’in thermal springs (jordan). Germs, 8(4):191.

Jackson, J. B., Kirby, M. X., Berger, W. H., Bjorndal, K. A., Botsford, L. W., Bourque, B. J., Bradbury, R. H., Cooke, R., Erlandson, J., Estes, J. A., et al. (2001). Historical overfishing and the recent collapse of coastal ecosystems. science, 293(5530):629–637.

John, J., Siva, V., Richa, K., Arya, A., and Kumar, A. (2019). Life in high salt concentrations with changing environmental conditions: Insights from genomic and phenotypic analysis of salinivibrio sp. Microorganisms, 7(11):577.

Katagi, T. (2010). Bioconcentration, bioaccumulation, and metabolism of pesticides in aquatic organisms. Reviews of environmental contamination and toxicology, pages 1–132.

Khan, F. A. and Ansari, A. A. (2005). Eutrophication: an ecological vision. The botanical review, 71(4):449–482.

Kron, T. A. D., Khalil, R. O., Salles, W., and Nunes, D. d. J. S. (2019). “eu erro, mas compenso”: uma crítica às ações de responsabilidade social corporativa por grandes organizações brasileiras como forma de compensação de danos. In Proceedings of the III International Meeting of Sociology (ISSOW), pages 11–25.

Kuppusamy, S., Maddela, N. R., Megharaj, M., Venkateswarlu, K., Kuppusamy, S., Maddela, N. R., Megharaj, M., and Venkateswarlu, K. (2020). Fate of total petroleum hydrocarbons in the environment. Total Petroleum Hydrocarbons: Environmental Fate, Toxicity, and Remediation, pages 57–77.

Lam, K. L., Zlatanović, L., and van der Hoek, J. P. (2020). Life cycle assessment of nutrient recycling from wastewater: a critical review. Water research, 173:115519.

Lamori, J. G., Xue, J., Rachmadi, A. T., Lopez, G. U., Kitajima, M., Gerba, C. P., Pepper, I. L., Brooks, J. P., and Sherchan, S. (2019). Removal of fecal indicator bacteria and antibiotic resistant genes in constructed wetlands. Environmental Science and Pollution Research, 26:10188–10197.

Li, C.-Y., Wang, X.-J., Chen, X.-L., Sheng, Q., Zhang, S., Wang, P., Quareshy, M., Rihtman, B., Shao, X., Gao, C., et al. (2021). A novel atp dependent dimethylsulfoniopropionate lyase in bacteria that releases dimethyl sulfide and acryloyl-coa. Elife, 10:e64045.

Lindström, E. S., Kamst-Van Agterveld, M. P., and Zwart, G. (2005). Distribution of typical freshwater bacterial groups is associated with ph, temperature, and lake water retention time. Applied and environmental microbiology, 71(12):8201–8206.

Lopes, F. A. C., Catão, E. C. P., Santana, R. H., Cabral, A. d. S., Paranhos, R., Rangel, T. P., Rezende, C. E. d., Edwards, R. A., Thompson, C. C., Thompson, F. L., et al. (2016a). Microbial community profile and water quality in a protected area of the caatinga biome. PLoS One, 11(2):e0148296.

Lopes, F. A. C., Catão, E. C. P., Santana, R. H., Cabral, A. d. S., Paranhos, R., Rangel, T. P., Rezende, C. E. d., Edwards, R. A., Thompson, C. C., Thompson, F. L., et al. (2016b). Microbial community profile and water quality in a protected area of the caatinga biome. PLoS One, 11(2):e0148296.

Lu, W.-Q., Xie, S.-H., Zhou, W.-S., Zhang, S.-H., and Liu, A.-L. (2008). Water pollution and health impact in china: a mini review. Open Environmental Sciences Journal, 2(1).

MacLeod, M., Arp, H. P. H., Tekman, M. B., and Jahnke, A. (2021). The global threat from plastic pollution. Science, 373(6550):61–65.

Madsen, E. L. (2011). Microorganisms and their roles in fundamental biogeochemical cycles. Current opinion in biotechnology, 22(3):456–464.

Markowitz, V. M., Chen, I.-M. A., Chu, K., Szeto, E., Palaniappan, K., Jacob, B., Ratner, A., Liolios, K., Pagani, I., Huntemann, M., et al. (2012). Img/m-hmp: a metagenome comparative analysis system for the human microbiome project. PloS one, 7(7):e40151.

Markowitz, V. M., Chen, I.-M. A., Chu, K., Szeto, E., Palaniappan, K., Pillay, M., Ratner, A., Huang, J., Pagani, I., Tringe, S., et al. (2014). Img/m 4 version of the integrated metagenome comparative analysis system. Nucleic acids research, 42(D1):D568–D573.

Mazet, J. A., Clifford, D. L., Coppolillo, P. B., Deolalikar, A. B., Erickson, J. D., and Kazwala, R. R. (2009). A “one health” approach to address emerging zoonoses: the hali project in tanzania. PLoS medicine, 6(12):e1000190.

Mello, F. V., Cunha, S. C., Fogaça, F. H., Alonso, M. B., Torres, J. P. M., and Fernandes, J. O. (2022). Occurrence of pharmaceuticals in seafood from two brazilian coastal areas: Implication for human risk assessment. Science of the Total Environment, 803:149744.

Millero, F. J. (2007). The marine inorganic carbon cycle. Chemical Reviews, 107(2):308–341. PMID: 17300138. DOI: 10.1021/cr0503557.

Novak Babič, M., Gostinčar, C., and Gunde-Cimerman, N. (2020). Microorganisms populating the water-related indoor biome. Applied Microbiology and Biotechnology, 104:6443–6462.

Nóbrega, M. S., Silva, B. S., Tschoeke, D. A., Appolinario, L. R., Calegario, G., Venas, T. M., Macedo, L., Asp, N., Cherene, B., Marques, J. S., Seidel, M., Dittmar, T., Santos, I. R., de Rezende, C. E., Thompson, C. C., and Thompson, F. L. (2022). Mangrove microbiome reveals

importance of sulfur metabolism in tropical coastal waters. Science of The Total Environment, 813:151889. DOI: https://doi.org/10.1016/j.scitotenv.2021.151889.

Organization, W. H. (2004). Guidelines for drinking-water quality, volume 1. World Health Organization.

Pamphlett, R., Doble, P. A., and Bishop, D. P. (2021). The prevalence of inorganic mercury in human kidneys suggests a role for toxic metals in essential hypertension. Toxics, 9(3):67.

Panda, S., Bhargava, B., and Gupte, M. D. (2021). One world one health: Widening horizons. The Indian Journal of Medical Research, 153(3):241.

Paschoalini, A. L. and Bazzoli, N. (2021). Heavy metals affecting neotropical freshwater fish: A review of the last 10 years of research. Aquatic Toxicology, 237:105906.

Pimentel, I. C., Dionísio, J. A., and Signor, D. (2016). Actinobacterias.

Potapowicz, J., Lambropoulou, D., Nannou, C., Kozioł, K., and Polkowska, Ż. (2020). Occurrences, sources, and transport of organochlorine pesticides in the aquatic environment of antarctica. Science of the Total Environment, 735:139475.

Ribeiro, H. (2012). Impactos de exploração do petróleo an saúde humana. Revista USP, (95):61–71.

Rogers, K. L., Carreres-Calabuig, J. A., Gorokhova, E., and Posth, N. R. (2020). Micro-by-micro interactions: How microorganisms influence the fate of marine microplastics. Limnology and Oceanography Letters, 5(1):18–36.

Santhini, K., Myla, J., Sajani, S., and Usharani, G. (2009). Screening of micrococcus sp from oil contaminated soil with reference to bioremediation. Botany Research International, 2(4):248–252.

Silva, B. S. d. O., Coutinho, F. H., Gregoracci, G. B., Leomil, L., de Oliveira, L. S., Fróes, A., Tschoeke, D., Soares, A. C., Cabral, A. S., Ward, N. D., Richey, J. E., Krusche, A. V., Yager, P. L., de Rezende, C. E., Thompson, C. C., and Thompson, F. L. (2017). Virioplankton assemblage structure in the lower river and ocean continuum of the amazon. mSphere, 2(5):e00366–17. DOI: 10.1128/mSphere.00366-17.

Silva, R. R., Ribeiro, C. J., Moura, T. R., Santos, M. B., Santos, A. D., Tavares, D. S., and Santos, P. L. (2021). Basic sanitation: a new indicator for the spread of covid-19? Transactions of The Royal Society of Tropical Medicine and Hygiene, 115(7):832–840.

Thompson, C. C., Chimetto, L., Edwards, R. A., Swings, J., Stackebrandt, E., and Thompson, F. L. (2013). Microbial genomic taxonomy. BMC genomics, 14(1):1–8.

Tschoeke, D. A., Coutinho, F. H., Leomil, L., Cavalcanti, G., Silva, B. S., Garcia, G. D., dos Anjos,

L. C., Nascimento, L. B., Moreira, L. S., Otsuki, K., Cordeiro, R. C., Rezende, C. E., Thompson, F. L., and Thompson, C. C. (2020). New bacterial and archaeal lineages discovered in organic rich sediments of a large tropical bay. Marine Genomics, 54:100789. DOI: https://doi.org/10.1016/j.margen.2020.100789.

Turusov, V., Rakitsky, V., and Tomatis, L. (2002). Dichlorodiphenyltrichloroethane (ddt): ubiquity, persistence, and risks. Environmental health perspectives, 110(2):125–128.

Valentine, J. F. and Heck, K. L. (2005). Perspective review of the impacts of overfishing on coral reef food web linkages. Coral Reefs, 24:209–213.

Vendrell-Puigmitja, L., Abril, M., Proia, L., Angona, C. E., Ricart, M., Oatley-Radcliffe, D. L., Williams, P. M., Zanain, M., and Llenas, L. (2020). Assessing the effects of metal mining effluents on freshwater ecosystems using biofilm as an ecological indicator: Comparison between nanofiltration and nanofiltration with electrocoagulation treatment technologies. Ecological Indicators, 113:106213.

Vergin, K. L., Urbach, E., Stein, J. L., DeLong, E. F., Lanoil, B. D., and Giovannoni, S. J. (1998). Screening of a fosmid library of marine environmental genomic dna fragments reveals four clones related to members of the order planctomycetales. Applied and environmental microbiology, 64(8):3075–3078.

Walsh, K., Haggerty, J. M., Doane, M. P., Hansen, J. J., Morris, M. M., Moreira, A. P. B., de Oliveira, L., Leomil, L., Garcia, G. D., Thompson, F., et al. (2017). Aura-biomes are present in the water layer above coral reef benthic macro-organisms. PeerJ, 5:e3666.

Walter, J. M., De Oliveira, L. S., Tschoeke, D. A., Meirelles, P. M., Neves, M. H. C. B., Batista, D., Carvalho, A. P., Santos Costa, R. D., Dobretsov, S., Coutinho, R., et al. (2021). Metagenomic insights into ecosystem function in the microbial mats of a large hypersaline coastal lagoon system. Frontiers in Marine Science, 8:715335.

Walter, J. M., Lopes, F. A., Lopes-Ferreira, M., Vidal, L. M., Leomil, L., Melo, F., De Azevedo, G. S., Oliveira, R., Medeiros, A. J., Melo, A. S., et al. (2018). Occurrence of harmful cyanobacteria in drinking water from a severely drought-impacted semi-arid region. Frontiers in Microbiology, page 176.

Walter, J. M., Tschoeke, D. A., Meirelles, P. M., de Oliveira, L., Leomil, L., Tenorio, M., Valle, R., Salomon, P. S., Thompson, C. C., and Thompson, F. L. (2016). Taxonomic and functional metagenomic signature of turfs in the abrolhos reef system (Brazil). PLoS One, 11(8):e0161168.

Wang, L., Lim, C. K., and Klotz, M. G. (2020). High synteny and sequence identity between genomes of nitroso-coccus oceani strains isolated from different oceanic gyres reveals genome economization and autochthonous clonal evolution. Microorganisms, 8(5). DOI: 10.3390/microorganisms8050693.

WHO (2021). Guidelines on recreational water quality. Volume 1: coastal and fresh waters. World Health Organization.

WHO et al. (2017). Guidelines for drinking-water quality: first addendum to the fourth edition.

Wood, D. E. and Salzberg, S. L. (2014). Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome biology, 15(3):1–12.

Zhuang, M., Achmon, Y., Cao, Y., Liang, X., Chen, L., Wang, H., Siame, B. A., and Leung, K. Y. (2021). Distribution of antibiotic resistance genes in the environment. Environmental Pollution, 285:117402.

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2024-02-19

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O. P. Gil, C., M. Pires, A. C., O. F. Schmidt, F., S. C. Santos, N., C. Alves, P., A. Oliveira, O., Avelino-Alves, D., F. Nobre, F., Duarte Garcia, G., C. Thompson, C., M. Dias, G., F. Thompson, F., & A. Tschoeke, D. (2024). Water quality in marine and freshwater environments: a metagenomics approach. Journal of Information and Data Management, 15(1), 69–79. https://doi.org/10.5753/jidm.2024.2624

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Brazilian Bioinformatics Research Groups